Fix missing resources in hemlfile template with jsonPatches (#1290)

Probably this has been affecting strategicMergePatches and dependencies as well, as the source of the problem is the underlying common feature called helm-x that previsouly used `helm template --output-dir`, which turned out to be not working as intended.

Ref #1279

pkg/state/helmx.go

@@ -25,6 +25,8 @@ func (st *HelmState) appendHelmXFlags(flags []string, release *ReleaseSpec) ([]s
 func (st *HelmState) PrepareChartify(helm helmexec.Interface, release *ReleaseSpec, workerIndex int) (bool, *chartify.ChartifyOpts, error) {
 	var opts chartify.ChartifyOpts
 
+	opts.WorkaroundOutputDirIssue = true
+
 	var shouldRun bool
 
 	opts.EnableKustomizeAlphaPlugins = true